SNP Profiles matching PA 90 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
1._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
2._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
3._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
4._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
5._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
6._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
7._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
8._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
9._ICS_16	GG	AA	AC	GG	CC	AA	GG	_	AA	GG	AG	AA	CT	TT
10._ICS_16	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
11._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
12._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
13._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
14._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
15._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
16._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
17._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
18._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	_	AA	GG	AG	AA	CT	TT
19._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
20._GC-08-067-1-89	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AA	CT	TT
21._PA_150_[PER]	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AC	CT	TT
22._PA_150_[PER]	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AC	CT	TT
23._PA_150_[PER]	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AC	CT	TT
24._PA_150_[PER]	GG	AA	AC	GG	CC	AA	GG	CC	AA	GG	AG	AC	CT	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	CT	AA	TT	GG	CC	CC	CT	CG	AA	CT	AG	CC
1._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
2._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
3._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
4._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
5._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
6._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
7._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
8._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
9._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	CG	AA	CT	AG	CC
10._ICS_16	GG	AC	CT	AG	_	GG	_	CC	CT	_	AA	CT	AG	CC
11._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	CG	AA	CT	AG	CC
12._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	CG	AA	CT	AG	CC
13._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	CG	AA	CT	AG	CC
14._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	CG	AA	CT	AG	CC
15._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	CG	AA	CT	AG	CC
16._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	CG	AA	CT	AG	CC
17._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	CG	AA	CT	AG	CC
18._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	CG	AA	CT	AG	CC
19._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	CC	CC	CT	_	AA	CT	AG	CC
20._GC-08-067-1-89	GG	AC	CT	AG	CG	GG	_	CC	CT	CG	AA	CT	AG	CC
21._PA_150_[PER]	CG	AC	TT	AA	_	GG	_	CC	CT	CC	AA	CC	AG	CC
22._PA_150_[PER]	CG	AC	TT	AA	_	GG	_	CC	CT	CC	AA	CC	AG	CC
23._PA_150_[PER]	CG	AC	TT	AA	_	GG	_	CC	CT	CC	AA	CC	AG	CC
24._PA_150_[PER]	CG	AC	TT	AA	_	GG	_	CC	CT	CC	AA	CC	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
1._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
2._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
3._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
4._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
5._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
6._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
7._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
8._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
9._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
10._ICS_16	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
11._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
12._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
13._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
14._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
15._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
16._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
17._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
18._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
19._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
20._GC-08-067-1-89	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	GG	CT	X_X	X_X
21._PA_150_[PER]	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	AG	CT	X_X	X_X
22._PA_150_[PER]	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	AG	CT	X_X	X_X
23._PA_150_[PER]	GG	AA	CC	CC	TT	TT	AC	TT	CC	GG	AG	CT	X_X	X_X
24._PA_150_[PER]	GG	AA	_	CC	TT	TT	AC	TT	CC	GG	AG	CT	X_X	X_X

Input profile: PA_90_[PER]

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 627

Dapeng Zhang, 2014

1._ICS_16

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 5 > FP

Dapeng Zhang, 2016

2._ICS_16

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 3 > FP

Dapeng Zhang, 2016

3._ICS_16

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 1 > FP

Dapeng Zhang, 2016

4._ICS_16

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 12

Dapeng Zhang, 2016

5._ICS_16

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 8

Dapeng Zhang, 2016

6._ICS_16

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 7

Dapeng Zhang, 2016

7._ICS_16

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 6

Dapeng Zhang, 2016

8._ICS_16

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._ICS_16

98.6 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 9 > FP

Dapeng Zhang, 2016

10._ICS_16

98.6 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 10

Dapeng Zhang, 2016

11._ICS_16 GC-08-067-1-89

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._ICS_16 GC-08-067-1-89

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._ICS_16 GC-08-067-1-89

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

14._ICS_16 GC-08-067-1-89

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

15._ICS_16 GC-08-067-1-89

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

16._ICS_16 GC-08-067-1-89

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._ICS_16 GC-08-067-1-89

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

18._ICS_16 GC-08-067-1-89

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

19._ICS_16 GC-08-067-1-89

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

20._ICS_16 GC-08-067-1-89

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

21._PA_150_[PER]

92.1 %
38 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P70 1019

Dapeng Zhang, 2016

22._PA_150_[PER]

92.1 %
38 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row4 C0183 28

Dapeng Zhang, 2016

23._PA_150_[PER]

92.1 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 679

Dapeng Zhang, 2016

24._PA_150_[PER]

91.9 %
37 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D679

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP836	20	TcSNP872
21	TcSNP878	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520